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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034521 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:16446660-16449832 (-) // 100.0 //):

Annotation Number : CG13431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623607_at
Accessions : protein= EC:2.4.1.- /// EC:2.4.1.101, nucleotide=
Interpro : 0006487 // protein N-linked glycosylation // inferred from electronic annotation /// 0008340 // determination of adult l
Homophila reports that CG13431 is a close match (1e-29) to human gene MEB;POMGNT1 (NP_060209), a gene associated with Muscle-eye-brain disease, 253280 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 54 of 4 1.50Up
Head123 94 of 4 0.90None
Eye165 74 of 4 1.24Up
Thoracicoabdominal ganglion156 24 of 4 1.20Up
Salivary gland265 104 of 4 1.99Up
Crop78 24 of 4 0.60Down
Midgut35 14 of 4 0.30Down
Tubule38 34 of 4 0.30Down
Hindgut134 44 of 4 1.00None
Heart118 74 of 4 0.89None
Fat body83 34 of 4 0.63Down
Ovary231 44 of 4 1.70Up
Testis37 24 of 4 0.30Down
Male accessory glands4410 484 of 433.00Up
Virgin spermatheca126 34 of 4 0.95None
Mated spermatheca168 144 of 4 1.26None
Adult carcass84 34 of 4 0.60Down
Larval CNS144 64 of 4 1.08Up
Larval Salivary gland755 934 of 4 5.66Up
Larval midgut28 20 of 4 0.21Down
Larval tubule32 44 of 4 0.20Down
Larval hindgut60 14 of 4 0.45Down
Larval fat body40 34 of 4 0.30Down
Larval trachea113 94 of 4 0.85Down
Larval carcass81 74 of 4 0.61Down
S2 cells (growing)275 34 of 4 2.07Up
Whole fly133 14 of 4

Looking for FBgn0034521. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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