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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034535 through 18771 annotations produced 1 hits



serine-type peptidase (CG11110):

Annotation Number : CG11110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034535
Gbrowse : chr2R:16529306-16529922 (+) // 100.0 //
Probeset : 1627020_at
Accessions : protein= NP_611501;, nucleotide= NM_137657;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016020 // membrane // in
Interpro : 0008236 // serine-type peptidase activity // inferred from electronic annotation
FlyMine data for FBgn0034535.
BioGrid reports that CG11110 interacts with CG9930 .
VDRC has 2 RNAi stocks for FBgn0034535 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 34 of 4 0.70None
Head49 ± 54 of 4 0.50Down
Eye81 ± 34 of 4 0.85None
Thoracicoabdominal ganglion44 ± 23 of 4 0.50Down
Salivary gland44 ± 70 of 4 0.47Down
Crop35 ± 22 of 4 0.40Down
Midgut53 ± 54 of 4 0.60Down
Tubule47 ± 23 of 4 0.50Down
Hindgut45 ± 22 of 4 0.50Down
Heart80 ± 54 of 4 0.84None
Fat body57 ± 64 of 4 0.60Down
Ovary93 ± 34 of 4 1.00None
Testis255 ± 124 of 4 2.70Up
Male accessory glands44 ± 50 of 4 0.50Down
Virgin spermatheca28 ± 21 of 4 0.30Down
Mated spermatheca32 ± 22 of 4 0.33Down
Adult carcass69 ± 54 of 4 0.70None
Larval CNS33 ± 31 of 4 0.35Down
Larval Salivary gland79 ± 62 of 4 0.83None
Larval midgut41 ± 21 of 4 0.43Down
Larval tubule47 ± 34 of 4 0.50Down
Larval hindgut45 ± 10 of 4 0.47Down
Larval fat body111 ± 204 of 4 1.20None
Larval trachea78 ± 52 of 4 0.82None
Larval carcass53 ± 61 of 4 0.56Down
S2 cells (growing)56 ± 24 of 4 0.59Down
Whole fly95 ± 124 of 4

Looking for FBgn0034535. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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