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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034539 through 18771 annotations produced 1 hits



/// /// GA10804 (CG11159 /// DmirCG11159 /// DpseGA10804):

Annotation Number : CG11159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034539
Gbrowse : chr2R:16543358-16543997 (-) // 100.0 //
Probeset : 1633049_at
Accessions : protein= NP_611505;, nucleotide= NM_137661;
Interpro : "0003796 // lysozyme activity // inferred from sequence or structural similarity /// 0003796 // lysozyme activity // non
FlyMine data for FBgn0034539.
Homophila reports that CG11159 is a close match (4e-15) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
BioGrid reports that CG11159 interacts with CG5930 .
VDRC has 1 RNAi stocks for FBgn0034539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 8.00Up
Head2 ± 10 of 4 1.60None
Eye2 ± 00 of 4 1.73None
Thoracicoabdominal ganglion14 ± 13 of 4 8.50Up
Salivary gland5 ± 20 of 4 3.35None
Crop3 ± 10 of 4 1.90None
Midgut4 ± 10 of 4 2.60None
Tubule4 ± 10 of 4 2.60Up
Hindgut2 ± 10 of 4 1.40None
Heart0 ± 00 of 4 0.45None
Fat body7 ± 30 of 4 4.23Up
Ovary1 ± 00 of 4 0.90None
Testis4 ± 10 of 4 2.80None
Male accessory glands4 ± 00 of 4 2.50None
Virgin spermatheca3 ± 00 of 4 2.20None
Mated spermatheca3 ± 10 of 4 2.33None
Adult carcass4 ± 10 of 4 2.50None
Larval CNS3 ± 21 of 4 2.18None
Larval Salivary gland3 ± 20 of 4 2.20None
Larval midgut5 ± 00 of 4 3.17Up
Larval tubule3 ± 10 of 4 1.80None
Larval hindgut2 ± 00 of 4 1.30None
Larval fat body3 ± 10 of 4 2.00None
Larval trachea0 ± 00 of 4 0.42None
Larval carcass5 ± 00 of 4 3.58Up
S2 cells (growing)3 ± 10 of 4 2.17None
Whole fly1 ± 00 of 4

Looking for FBgn0034539. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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