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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034540 through 18771 annotations produced 1 hits

Leucine-rich tendon-specific protein (Lrt):

Annotation Number : CG11136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034540
Gbrowse : chr2R:16544744-16548012 (+) // 100.0 //
Probeset : 1641219_at
Accessions : protein= NP_611506;, nucleotide= NM_137662;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005927 // muscle tendon junction // inferred from direct a
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0034540.
BDGP gene expression has embryonic in situ data for CG11136: 71 pix of staining in 21 body parts.
Homophila reports that CG11136 is a close match (9e-12) to human gene PKD1 (NP_001009944), a gene associated with Polycystic kidney disease, adult type I, 173900 (3).
TRiP has 1 RNAi stocks for FBgn0034540 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034540 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head8 20 of 4 3.60None
Eye5 20 of 4 2.23None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland1 00 of 4 0.66None
Crop7 20 of 4 3.30None
Midgut1 00 of 4 0.40None
Tubule3 00 of 4 1.70Up
Hindgut4 10 of 4 2.00None
Heart0 00 of 4 0.31None
Fat body1 00 of 4 0.80None
Ovary1 00 of 4 0.50None
Testis2 10 of 4 1.00None
Male accessory glands1 00 of 4 0.70None
Virgin spermatheca1 00 of 4 0.75None
Mated spermatheca3 10 of 4 1.33None
Adult carcass26 50 of 411.40Up
Larval CNS41 44 of 418.27Up
Larval Salivary gland3 10 of 4 1.31None
Larval midgut3 10 of 4 1.42None
Larval tubule1 00 of 4 0.50None
Larval hindgut20 30 of 4 8.87Up
Larval fat body73 04 of 432.30Up
Larval trachea29 53 of 412.99Up
Larval carcass27 20 of 412.04Up
S2 cells (growing)1 00 of 4 0.44None
Whole fly2 00 of 4

Looking for FBgn0034540. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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