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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034542 through 18771 annotations produced 3 hits



CG9025 (Fem-1):

Annotation Number : CG9025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034542
Gbrowse : chr2R:16554189-16554816 (-) // 100.0 //
Probeset : 1634638_at
Accessions : protein= NP_611508; /// NP_725993;, nucleotide= NM_137664; /// NM_166408;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0034542.
Homophila reports that CG9025 is a close match (8e-11) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
BioGrid reports that CG9025 interacts with CG9312 CG9480 .
VDRC has 1 RNAi stocks for FBgn0034542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 1.50None
Head7 ± 00 of 4 1.80None
Eye5 ± 10 of 4 1.40None
Thoracicoabdominal ganglion8 ± 12 of 4 2.00None
Salivary gland18 ± 30 of 4 4.57Up
Crop10 ± 00 of 4 2.60Up
Midgut7 ± 10 of 4 1.80None
Tubule17 ± 13 of 4 4.10Up
Hindgut8 ± 01 of 4 2.00None
Heart5 ± 01 of 4 1.39None
Fat body13 ± 21 of 4 3.28Up
Ovary6 ± 02 of 4 1.70None
Testis3 ± 00 of 4 0.90None
Male accessory glands114 ± 174 of 427.70Up
Virgin spermatheca10 ± 12 of 4 2.55Up
Mated spermatheca8 ± 11 of 4 2.01None
Adult carcass8 ± 20 of 4 2.10None
Larval CNS8 ± 23 of 4 2.07None
Larval Salivary gland12 ± 23 of 4 3.04Up
Larval midgut23 ± 13 of 4 5.58Up
Larval tubule15 ± 13 of 4 3.80Up
Larval hindgut6 ± 03 of 4 1.67None
Larval fat body8 ± 31 of 4 2.00None
Larval trachea4 ± 11 of 4 1.07None
Larval carcass5 ± 10 of 4 1.44None
S2 cells (growing)15 ± 14 of 4 3.81Up
Whole fly4 ± 10 of 4



CG9025 (Fem-1):

Annotation Number : CG9025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034542
Gbrowse : chr2R:16549978-16554790 (-) // 100.0 //
Probeset : 1638186_a_at
Accessions : protein= NP_611508; /// NP_725993;, nucleotide= NM_137664; /// NM_166408;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0034542.
Homophila reports that CG9025 is a close match (8e-11) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
BioGrid reports that CG9025 interacts with CG9312 CG9480 .
VDRC has 1 RNAi stocks for FBgn0034542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain343 ± 44 of 4 2.20Up
Head167 ± 64 of 4 1.10None
Eye104 ± 24 of 4 0.67Down
Thoracicoabdominal ganglion393 ± 54 of 4 2.50Up
Salivary gland155 ± 94 of 4 1.01None
Crop508 ± 164 of 4 3.30Up
Midgut133 ± 34 of 4 0.90None
Tubule254 ± 234 of 4 1.60Up
Hindgut267 ± 84 of 4 1.70Up
Heart209 ± 64 of 4 1.36Up
Fat body167 ± 154 of 4 1.09None
Ovary224 ± 44 of 4 1.40Up
Testis119 ± 24 of 4 0.80Down
Male accessory glands177 ± 44 of 4 1.10None
Virgin spermatheca142 ± 204 of 4 0.92None
Mated spermatheca112 ± 74 of 4 0.73Down
Adult carcass193 ± 104 of 4 1.30Up
Larval CNS224 ± 94 of 4 1.45Up
Larval Salivary gland116 ± 64 of 4 0.75Down
Larval midgut171 ± 184 of 4 1.11None
Larval tubule159 ± 14 of 4 1.00None
Larval hindgut237 ± 144 of 4 1.54Up
Larval fat body73 ± 54 of 4 0.50Down
Larval trachea113 ± 124 of 4 0.73Down
Larval carcass589 ± 1214 of 4 3.81Up
S2 cells (growing)163 ± 34 of 4 1.06None
Whole fly154 ± 104 of 4



CG9025 (Fem-1):

Annotation Number : CG9025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034542
Gbrowse : chr2R:16554189-16554816 (-) // 100.0 //
Probeset : 1635417_a_at
Accessions : protein= NP_611508; /// NP_725993;, nucleotide= NM_137664; /// NM_166408;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0034542.
Homophila reports that CG9025 is a close match (8e-11) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
BioGrid reports that CG9025 interacts with CG9312 CG9480 .
VDRC has 1 RNAi stocks for FBgn0034542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 12 of 4 0.40Down
Head13 ± 14 of 4 0.60None
Eye7 ± 21 of 4 0.35Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.30Down
Salivary gland27 ± 53 of 4 1.24None
Crop36 ± 44 of 4 1.70Up
Midgut27 ± 12 of 4 1.20None
Tubule12 ± 13 of 4 0.60Down
Hindgut30 ± 24 of 4 1.40None
Heart11 ± 04 of 4 0.54Down
Fat body18 ± 23 of 4 0.83None
Ovary22 ± 14 of 4 1.00None
Testis5 ± 10 of 4 0.20Down
Male accessory glands58 ± 54 of 4 2.60Up
Virgin spermatheca10 ± 12 of 4 0.46Down
Mated spermatheca11 ± 12 of 4 0.53Down
Adult carcass23 ± 14 of 4 1.00None
Larval CNS7 ± 12 of 4 0.34Down
Larval Salivary gland14 ± 23 of 4 0.65None
Larval midgut21 ± 03 of 4 0.97None
Larval tubule24 ± 24 of 4 1.10None
Larval hindgut14 ± 03 of 4 0.66None
Larval fat body18 ± 32 of 4 0.80None
Larval trachea9 ± 34 of 4 0.43Down
Larval carcass25 ± 84 of 4 1.17None
S2 cells (growing)46 ± 24 of 4 2.13Up
Whole fly22 ± 34 of 4

Looking for FBgn0034542. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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