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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034548 through 18771 annotations produced 1 hits



(CG13443):

Annotation Number : CG13443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034548
Gbrowse : chr2R:16661233-16662618 (+) // 100.0 //
Probeset : 1624000_at
Accessions : protein= NP_611513;, nucleotide= NM_137669;
FlyMine data for FBgn0034548.
VDRC has 3 RNAi stocks for FBgn0034548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head4 ± 10 of 4 0.90None
Eye1 ± 00 of 4 0.31None
Thoracicoabdominal ganglion4 ± 20 of 4 1.00None
Salivary gland11 ± 20 of 4 2.43None
Crop5 ± 20 of 4 1.10None
Midgut14 ± 20 of 4 3.10Up
Tubule10 ± 00 of 4 2.20Up
Hindgut8 ± 21 of 4 1.90None
Heart3 ± 11 of 4 0.82None
Fat body6 ± 30 of 4 1.48None
Ovary3 ± 00 of 4 0.70None
Testis7 ± 10 of 4 1.50None
Male accessory glands17 ± 21 of 4 3.70Up
Virgin spermatheca6 ± 10 of 4 1.45None
Mated spermatheca5 ± 10 of 4 1.09None
Adult carcass6 ± 20 of 4 1.30None
Larval CNS4 ± 11 of 4 0.91None
Larval Salivary gland9 ± 00 of 4 2.00None
Larval midgut6 ± 10 of 4 1.44None
Larval tubule3 ± 10 of 4 0.70None
Larval hindgut6 ± 10 of 4 1.32None
Larval fat body4 ± 10 of 4 0.90None
Larval trachea7 ± 40 of 4 1.63None
Larval carcass2 ± 00 of 4 0.56None
S2 cells (growing)7 ± 10 of 4 1.66None
Whole fly4 ± 20 of 4

Looking for FBgn0034548. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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