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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034552 through 18771 annotations produced 1 hits



(CG17999):

Annotation Number : CG17999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034552
Gbrowse : chr2R:16735484-16737424 (-) // 100.0 //
Probeset : 1625099_at
Accessions : protein= NP_611517;, nucleotide= NM_137673;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0034552.
BDGP gene expression has embryonic in situ data for CG17999: 11 pix of staining in 2 body parts.
BioGrid reports that CG17999 interacts with CG4900 CG9993 .
VDRC has 2 RNAi stocks for FBgn0034552 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.10Down
Head7 10 of 4 0.20Down
Eye5 11 of 4 0.17Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland7 30 of 4 0.21Down
Crop3 10 of 4 0.10Down
Midgut8 22 of 4 0.30Down
Tubule25 180 of 4 0.70None
Hindgut2003 724 of 458.10Up
Heart4 10 of 4 0.13Down
Fat body5 40 of 4 0.16Down
Ovary4 10 of 4 0.10Down
Testis3 11 of 4 0.10Down
Male accessory glands14 10 of 4 0.40Down
Virgin spermatheca6 20 of 4 0.20Down
Mated spermatheca7 10 of 4 0.20Down
Adult carcass6 20 of 4 0.20Down
Larval CNS11 22 of 4 0.35Down
Larval Salivary gland7 30 of 4 0.21Down
Larval midgut3 10 of 4 0.11Down
Larval tubule7 00 of 4 0.20Down
Larval hindgut54 54 of 4 1.58Up
Larval fat body10 20 of 4 0.30Down
Larval trachea7 40 of 4 0.22Down
Larval carcass68 24 of 4 2.00Up
S2 cells (growing)5 00 of 4 0.16Down
Whole fly34 24 of 4

Looking for FBgn0034552. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime