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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034553 through 18771 annotations produced 1 hits



(CG9993):

Annotation Number : CG9993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034553
Gbrowse : chrUextra:8129665-8130442 (+) // 36.48 // /// chr2R:16737650-16739626 (-) // 100.0 //
Probeset : 1622901_at
Accessions : protein= NP_611518;, nucleotide= NM_137674;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0034553.
BDGP gene expression has embryonic in situ data for CG9993: 11 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0034553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head4 10 of 4 0.10Down
Eye4 10 of 4 0.11Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland7 40 of 4 0.20Down
Crop3 10 of 4 0.10Down
Midgut11 20 of 4 0.30Down
Tubule13 80 of 4 0.40Down
Hindgut2648 1014 of 469.00Up
Heart3 10 of 4 0.08Down
Fat body5 10 of 4 0.14Down
Ovary2 00 of 4 0.10Down
Testis2 10 of 4 0.10Down
Male accessory glands9 30 of 4 0.30Down
Virgin spermatheca2 10 of 4 0.07Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass6 10 of 4 0.20Down
Larval CNS103 144 of 4 2.70Up
Larval Salivary gland4 10 of 4 0.12Down
Larval midgut6 30 of 4 0.16Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut180 314 of 4 4.70Up
Larval fat body3 10 of 4 0.10Down
Larval trachea8 141 of 4 0.23Down
Larval carcass239 314 of 4 6.24Up
S2 cells (growing)2 00 of 4 0.06Down
Whole fly38 34 of 4

Looking for FBgn0034553. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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