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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034563 through 18771 annotations produced 1 hits


Annotation Number : CG15649
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034563
Gbrowse : chr2R:16860723-16861436 (-) // 100.0 //
Probeset : 1634210_at
Accessions : protein= NP_001163220; /// NP_611527;, nucleotide= NM_001169749; /// NM_137683;
FlyMine data for FBgn0034563.
BioGrid reports that CG15649 interacts with CG4183 CG6459 CG7176 CG7583 CG9392 .
VDRC has 4 RNAi stocks for FBgn0034563 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head3 11 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland6 20 of 4 0.10Down
Crop20 34 of 4 0.30Down
Midgut67 44 of 4 1.00None
Tubule4 00 of 4 0.10Down
Hindgut35 24 of 4 0.50Down
Heart5 00 of 4 0.09Down
Fat body9 41 of 4 0.15Down
Ovary3 00 of 4 0.00Down
Testis3 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca3 00 of 4 0.05Down
Mated spermatheca2 00 of 4 0.03Down
Adult carcass10 30 of 4 0.20Down
Larval CNS2 30 of 4 0.04Down
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut6 01 of 4 0.09Down
Larval tubule4 21 of 4 0.10Down
Larval hindgut4 10 of 4 0.08Down
Larval fat body3 10 of 4 0.00Down
Larval trachea30 24 of 4 0.47Down
Larval carcass5 00 of 4 0.08Down
S2 cells (growing)8 01 of 4 0.13Down
Whole fly64 44 of 4

Looking for FBgn0034563. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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