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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034564 through 18771 annotations produced 1 hits



(CG9344):

Annotation Number : CG9344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034564
Gbrowse : chr2R:16864560-16865102 (+) // 100.0 //
Probeset : 1628560_at
Accessions : protein= NP_611528;, nucleotide= NM_137684;
Pathway : via spliceosome // inferred from sequence or structural similarity"
Interpro : 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005688 // U6 snRNP // non-tracea
FlyMine data for FBgn0034564.
BDGP gene expression has embryonic in situ data for CG9344: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034564 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 84 of 4 0.50Down
Head167 64 of 4 0.50Down
Eye161 44 of 4 0.52Down
Thoracicoabdominal ganglion156 44 of 4 0.50Down
Salivary gland168 54 of 4 0.54Down
Crop201 114 of 4 0.60Down
Midgut199 64 of 4 0.60Down
Tubule242 124 of 4 0.80Down
Hindgut189 34 of 4 0.60Down
Heart166 64 of 4 0.54Down
Fat body149 154 of 4 0.48Down
Ovary443 34 of 4 1.40Up
Testis185 34 of 4 0.60Down
Male accessory glands342 104 of 4 1.10None
Virgin spermatheca225 34 of 4 0.72Down
Mated spermatheca271 154 of 4 0.87None
Adult carcass138 54 of 4 0.40Down
Larval CNS769 494 of 4 2.48Up
Larval Salivary gland607 194 of 4 1.96Up
Larval midgut199 114 of 4 0.64Down
Larval tubule325 74 of 4 1.00None
Larval hindgut279 74 of 4 0.90None
Larval fat body250 154 of 4 0.80None
Larval trachea764 774 of 4 2.46Up
Larval carcass289 114 of 4 0.93None
S2 cells (growing)607 84 of 4 1.96Up
Whole fly310 204 of 4

Looking for FBgn0034564. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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