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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034565 through 18771 annotations produced 1 hits



(CG15650):

Annotation Number : CG15650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034565
Gbrowse : chr2R:16865232-16865742 (-) // 100.0 //
Probeset : 1641387_at
Accessions : protein= NP_611529;, nucleotide= NM_137685;
FlyMine data for FBgn0034565.
VDRC has 2 RNAi stocks for FBgn0034565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 0.70None
Head8 20 of 4 0.70None
Eye2 00 of 4 0.17Down
Thoracicoabdominal ganglion12 21 of 4 1.00None
Salivary gland23 60 of 4 1.83None
Crop12 00 of 4 1.00None
Midgut22 10 of 4 1.70Up
Tubule13 01 of 4 1.00None
Hindgut12 02 of 4 1.00None
Heart4 20 of 4 0.31Down
Fat body7 50 of 4 0.61None
Ovary9 13 of 4 0.80None
Testis10 01 of 4 0.80None
Male accessory glands12 40 of 4 1.00None
Virgin spermatheca10 10 of 4 0.84None
Mated spermatheca5 10 of 4 0.46Down
Adult carcass13 00 of 4 1.10None
Larval CNS9 24 of 4 0.74None
Larval Salivary gland24 30 of 4 1.89Up
Larval midgut26 30 of 4 2.11Up
Larval tubule13 21 of 4 1.00None
Larval hindgut13 23 of 4 1.05None
Larval fat body25 33 of 4 2.00Up
Larval trachea12 42 of 4 1.00None
Larval carcass20 20 of 4 1.61None
S2 cells (growing)20 04 of 4 1.61Up
Whole fly12 11 of 4

Looking for FBgn0034565. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime