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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034566 through 18771 annotations produced 1 hits



/// (CG9313 /// DmirCG9313):

Annotation Number : CG9313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034566
Gbrowse : chr2R:16866843-16871548 (+) // 100.0 //
Probeset : 1640970_at
Accessions : protein= NP_611530;, nucleotide= NM_137686;
Pathway : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred
FlyMine data for FBgn0034566.
Homophila reports that CG9313 is a close match (1e-15) to human gene (NP_075462), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0034566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 20 of 4 0.10Down
Head35 04 of 4 0.30Down
Eye10 10 of 4 0.10Down
Thoracicoabdominal ganglion44 33 of 4 0.40Down
Salivary gland16 70 of 4 0.16Down
Crop4 10 of 4 0.00Down
Midgut9 20 of 4 0.10Down
Tubule9 10 of 4 0.10Down
Hindgut8 00 of 4 0.10Down
Heart3 10 of 4 0.03Down
Fat body17 40 of 4 0.16Down
Ovary1 00 of 4 0.00Down
Testis1106 364 of 410.60Up
Male accessory glands15 40 of 4 0.10Down
Virgin spermatheca17 20 of 4 0.17Down
Mated spermatheca21 30 of 4 0.20Down
Adult carcass27 50 of 4 0.30Down
Larval CNS22 51 of 4 0.21Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut9 30 of 4 0.09Down
Larval tubule14 20 of 4 0.10Down
Larval hindgut5 10 of 4 0.05Down
Larval fat body176 673 of 4 1.70None
Larval trachea8 121 of 4 0.08Down
Larval carcass7 20 of 4 0.07Down
S2 cells (growing)8 20 of 4 0.08Down
Whole fly104 114 of 4

Looking for FBgn0034566. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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