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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034568 through 18771 annotations produced 1 hits



(CG3216):

Annotation Number : CG3216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034568
Gbrowse : chr2R:16874337-16878676 (-) // 100.0 //
Probeset : 1640308_a_at
Accessions : protein= NP_611532; /// NP_726013;, nucleotide= NM_137688; /// NM_166415;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // infer
FlyMine data for FBgn0034568.
Homophila reports that CG3216 is a close match (7e-11) to human gene IPD1;IRAK4;REN64 (NP_057207), a gene associated with Invasive pneumococcal disease, recurrent isolated, 1, 610799 (3);IRAK4 deficiency, 607676 (3).
TRiP has 1 RNAi stocks for FBgn0034568 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50None
Head2 ± 10 of 4 1.50None
Eye1 ± 00 of 4 0.69None
Thoracicoabdominal ganglion4 ± 11 of 4 2.10None
Salivary gland7 ± 30 of 4 3.92None
Crop0 ± 00 of 4 0.30None
Midgut5 ± 10 of 4 2.90None
Tubule2 ± 00 of 4 1.20None
Hindgut1 ± 00 of 4 1.00None
Heart2 ± 00 of 4 1.32None
Fat body1 ± 10 of 4 0.88None
Ovary1 ± 00 of 4 1.00None
Testis1 ± 00 of 4 1.00None
Male accessory glands2 ± 20 of 4 1.40None
Virgin spermatheca2 ± 10 of 4 1.39None
Mated spermatheca2 ± 00 of 4 1.20None
Adult carcass2 ± 10 of 4 1.60None
Larval CNS4 ± 12 of 4 2.69Up
Larval Salivary gland3 ± 10 of 4 1.78None
Larval midgut3 ± 10 of 4 1.82None
Larval tubule4 ± 00 of 4 2.50Up
Larval hindgut2 ± 10 of 4 1.31None
Larval fat body5 ± 10 of 4 2.90None
Larval trachea2 ± 10 of 4 1.09None
Larval carcass0 ± 00 of 4 0.45None
S2 cells (growing)2 ± 00 of 4 1.47None
Whole fly1 ± 00 of 4

Looking for FBgn0034568. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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