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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034570 through 18771 annotations produced 1 hits



(CG10543):

Annotation Number : CG10543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034570
Gbrowse : chr2R:16884145-16894148 (+) // 100.0 //
Probeset : 1633894_a_at
Accessions : protein= NP_611534; /// NP_726015; /// NP_788421;, nucleotide= NM_137690; /// NM_166416; /// NM_176241;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0034570.
BDGP gene expression has embryonic in situ data for CG10543: 4 pix of staining in 1 body parts.
Homophila reports that CG10543 is a close match (5e-11) to human gene AITD3;ZFAT1;ZNF406 (NP_001025110), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0034570 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 34 of 4 2.20Up
Head28 ± 54 of 4 1.00None
Eye27 ± 44 of 4 0.93None
Thoracicoabdominal ganglion36 ± 44 of 4 1.30None
Salivary gland41 ± 40 of 4 1.43None
Crop41 ± 24 of 4 1.40None
Midgut20 ± 14 of 4 0.70None
Tubule8 ± 10 of 4 0.30Down
Hindgut21 ± 04 of 4 0.70None
Heart19 ± 14 of 4 0.66None
Fat body24 ± 52 of 4 0.84None
Ovary52 ± 04 of 4 1.80Up
Testis40 ± 24 of 4 1.40None
Male accessory glands19 ± 20 of 4 0.70None
Virgin spermatheca5 ± 20 of 4 0.18Down
Mated spermatheca4 ± 10 of 4 0.15Down
Adult carcass33 ± 22 of 4 1.10None
Larval CNS34 ± 44 of 4 1.18None
Larval Salivary gland18 ± 10 of 4 0.65None
Larval midgut11 ± 11 of 4 0.41Down
Larval tubule17 ± 11 of 4 0.60None
Larval hindgut15 ± 12 of 4 0.55Down
Larval fat body16 ± 40 of 4 0.60None
Larval trachea17 ± 53 of 4 0.61None
Larval carcass17 ± 12 of 4 0.61None
S2 cells (growing)115 ± 34 of 4 3.98Up
Whole fly29 ± 44 of 4

Looking for FBgn0034570. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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