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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034576 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase B14.7 (CG9350):

Annotation Number : CG9350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034576
Gbrowse : chr2R:16912584-16913595 (+) // 100.0 //
Probeset : 1625717_s_at
Accessions : protein= NP_611538;, nucleotide= NM_137694;
FlyMine data for FBgn0034576.
VDRC has 3 RNAi stocks for FBgn0034576 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1239 354 of 4 1.60Up
Head1243 414 of 4 1.60Up
Eye2132 504 of 4 2.83Up
Thoracicoabdominal ganglion1971 674 of 4 2.60Up
Salivary gland1547 324 of 4 2.05Up
Crop1060 464 of 4 1.40Up
Midgut947 164 of 4 1.30Up
Tubule1193 444 of 4 1.60Up
Hindgut1595 214 of 4 2.10Up
Heart1801 834 of 4 2.39Up
Fat body1618 1044 of 4 2.15Up
Ovary352 84 of 4 0.50Down
Testis319 34 of 4 0.40Down
Male accessory glands715 214 of 4 0.90None
Virgin spermatheca1618 524 of 4 2.15Up
Mated spermatheca1273 614 of 4 1.69Up
Adult carcass2220 904 of 4 2.90Up
Larval CNS551 464 of 4 0.73Down
Larval Salivary gland557 174 of 4 0.74Down
Larval midgut1028 474 of 4 1.36Up
Larval tubule847 594 of 4 1.10None
Larval hindgut1309 524 of 4 1.74Up
Larval fat body355 254 of 4 0.50Down
Larval trachea733 444 of 4 0.97None
Larval carcass1224 794 of 4 1.62Up
S2 cells (growing)445 14 of 4 0.59Down
Whole fly754 114 of 4

Looking for FBgn0034576. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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