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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034578 through 18771 annotations produced 1 hits



(CG15653):

Annotation Number : CG15653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034578
Gbrowse : chr2R:16947403-16947973 (-) // 100.0 //
Probeset : 1629692_at
Accessions : protein= NP_611540;, nucleotide= NM_137696;
FlyMine data for FBgn0034578.
VDRC has 2 RNAi stocks for FBgn0034578 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 04 of 4 0.80Down
Head63 ± 34 of 4 0.80None
Eye45 ± 24 of 4 0.61Down
Thoracicoabdominal ganglion62 ± 34 of 4 0.80None
Salivary gland19 ± 82 of 4 0.26Down
Crop71 ± 24 of 4 0.90None
Midgut55 ± 14 of 4 0.70Down
Tubule46 ± 54 of 4 0.60Down
Hindgut36 ± 04 of 4 0.50Down
Heart49 ± 04 of 4 0.66Down
Fat body51 ± 54 of 4 0.68Down
Ovary111 ± 04 of 4 1.50Up
Testis97 ± 24 of 4 1.30Up
Male accessory glands37 ± 24 of 4 0.50Down
Virgin spermatheca42 ± 34 of 4 0.57Down
Mated spermatheca46 ± 04 of 4 0.61Down
Adult carcass48 ± 54 of 4 0.60Down
Larval CNS58 ± 44 of 4 0.77Down
Larval Salivary gland65 ± 24 of 4 0.86None
Larval midgut43 ± 54 of 4 0.58Down
Larval tubule46 ± 44 of 4 0.60Down
Larval hindgut51 ± 34 of 4 0.67Down
Larval fat body55 ± 44 of 4 0.70Down
Larval trachea84 ± 34 of 4 1.11None
Larval carcass45 ± 44 of 4 0.60Down
S2 cells (growing)27 ± 24 of 4 0.36Down
Whole fly75 ± 44 of 4

Looking for FBgn0034578. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime