FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034588 through 18771 annotations produced 1 hits

(CG9394):

Annotation Number : CG9394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034588
Gbrowse : chr2R:17005898-17008214 (+) // 100.0 //
Probeset : 1636970_at
Accessions : protein= NP_611548;, nucleotide= NM_137704;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0034588.
BDGP gene expression has embryonic in situ data for CG9394: 13 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0034588 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1860 ± 34	4 of 4	18.00	Up
Head	574 ± 33	4 of 4	5.60	Up
Eye	168 ± 7	4 of 4	1.63	Up
Thoracicoabdominal ganglion	1943 ± 62	4 of 4	18.80	Up
Salivary gland	10 ± 4	0 of 4	0.10	Down
Crop	1 ± 0	0 of 4	0.00	Down
Midgut	801 ± 53	4 of 4	7.80	Up
Tubule	43 ± 20	2 of 4	0.40	Down
Hindgut	16 ± 2	0 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.01	Down
Fat body	4 ± 4	0 of 4	0.05	Down
Ovary	22 ± 1	4 of 4	0.20	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	130 ± 8	4 of 4	1.30	None
Virgin spermatheca	19 ± 3	3 of 4	0.19	Down
Mated spermatheca	19 ± 4	2 of 4	0.18	Down
Adult carcass	14 ± 4	0 of 4	0.10	Down
Larval CNS	38 ± 6	4 of 4	0.38	Down
Larval Salivary gland	0 ± 0	0 of 4	0.01	Down
Larval midgut	605 ± 32	4 of 4	5.86	Up
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.01	Down
Larval fat body	5 ± 1	0 of 4	0.10	Down
Larval trachea	4 ± 6	0 of 4	0.04	Down
Larval carcass	1 ± 0	0 of 4	0.01	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	103 ± 13	4 of 4

Looking for FBgn0034588. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720