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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034590 through 18771 annotations produced 1 hits



Magi (Magi):

Annotation Number : CG30388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034590
Gbrowse : chr2R:17016967-17030067 (-) // 100.0 //
Probeset : 1638176_at
Accessions : protein= NP_611551;, nucleotide= NM_137707;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // non-traceable author s
Interpro : 0004385 // guanylate kinase activity // inferred from sequence or structural similarity /// 0004385 // guanylate kinase
FlyMine data for FBgn0034590.
Homophila reports that CG30388 is a close match (2e-11) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
TRiP has 3 RNAi stocks for FBgn0034590 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 04 of 4 0.80Down
Head33 14 of 4 0.50Down
Eye74 34 of 4 1.23Up
Thoracicoabdominal ganglion38 44 of 4 0.60Down
Salivary gland199 44 of 4 3.30Up
Crop50 24 of 4 0.80Down
Midgut28 04 of 4 0.50Down
Tubule66 94 of 4 1.10None
Hindgut54 14 of 4 0.90Down
Heart22 24 of 4 0.37Down
Fat body18 33 of 4 0.31Down
Ovary216 24 of 4 3.60Up
Testis37 34 of 4 0.60Down
Male accessory glands118 44 of 4 1.90Up
Virgin spermatheca32 14 of 4 0.54Down
Mated spermatheca46 54 of 4 0.77None
Adult carcass34 34 of 4 0.60Down
Larval CNS128 44 of 4 2.13Up
Larval Salivary gland108 44 of 4 1.79Up
Larval midgut34 14 of 4 0.56Down
Larval tubule50 24 of 4 0.80Down
Larval hindgut46 34 of 4 0.77Down
Larval fat body27 14 of 4 0.50Down
Larval trachea85 24 of 4 1.41Up
Larval carcass112 114 of 4 1.85Up
S2 cells (growing)277 134 of 4 4.57Up
Whole fly60 14 of 4

Looking for FBgn0034590. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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