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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034592 through 18771 annotations produced 1 hits


(CG9406):

Annotation Number : CG9406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034592
Gbrowse : chr2R:17029947-17030702 (+) // 100.0 //
Probeset : 1637368_at
Accessions : protein= NP_611552;, nucleotide= NM_137708;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0034592.
VDRC has 4 RNAi stocks for FBgn0034592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head6 ± 11 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.12Down
Crop5 ± 10 of 4 0.10Down
Midgut7 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body7 ± 10 of 4 0.07Down
Ovary2 ± 10 of 4 0.00Down
Testis821 ± 114 of 4 8.50Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 00 of 4 0.07Down
Adult carcass10 ± 10 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.05Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut5 ± 00 of 4 0.06Down
Larval fat body69 ± 323 of 4 0.70None
Larval trachea7 ± 80 of 4 0.08Down
Larval carcass5 ± 10 of 4 0.06Down
S2 cells (growing)5 ± 10 of 4 0.06Down
Whole fly96 ± 144 of 4

Looking for FBgn0034592. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime