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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034606 through 18771 annotations produced 1 hits



"Ankyrin-repeat ( SH3-domain and Proline-rich-region containing Protein"):

Annotation Number : CG18375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2R:17105360-17138458 (-) // 100.0 //
Probeset : 1631216_a_at
Accessions : protein= , nucleotide= NP_611565; /// NP_788423;
Interpro : 0005912 // adherens junction // inferred from direct assay
FlyMine data for full length.
BioGrid reports that CG18375 interacts with CG5053 CG5376 CG6521 CG7123 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 94 of 4 3.10Up
Head80 84 of 4 2.10Up
Eye62 34 of 4 1.66Up
Thoracicoabdominal ganglion39 24 of 4 1.10None
Salivary gland175 214 of 4 4.66Up
Crop131 124 of 4 3.50Up
Midgut15 22 of 4 0.40Down
Tubule21 14 of 4 0.60Down
Hindgut44 24 of 4 1.20None
Heart14 33 of 4 0.39Down
Fat body41 144 of 4 1.11None
Ovary24 04 of 4 0.70None
Testis11 03 of 4 0.30Down
Male accessory glands319 154 of 4 8.50Up
Virgin spermatheca48 104 of 4 1.30None
Mated spermatheca62 64 of 4 1.67Up
Adult carcass47 34 of 4 1.30None
Larval CNS64 134 of 4 1.72Up
Larval Salivary gland137 234 of 4 3.66Up
Larval midgut14 13 of 4 0.37Down
Larval tubule14 14 of 4 0.40Down
Larval hindgut58 14 of 4 1.56Up
Larval fat body1 00 of 4 0.00Down
Larval trachea34 24 of 4 0.91None
Larval carcass112 234 of 4 3.00Up
S2 cells (growing)0 00 of 4 0.01Down
Whole fly37 64 of 4

Looking for FBgn0034606. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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