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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034612 through 18771 annotations produced 1 hits



/// (CG10505 /// DmirCG10505):

Annotation Number : CG10505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034612
Gbrowse : chr2R:17173224-17177331 (-) // 100.0 //
Probeset : 1639368_at
Accessions : protein= NP_611571;, nucleotide= NM_137727;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transpo
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0034612.
Homophila reports that CG10505 is a close match (3e-11) to human gene ABCD3;PMP70;PXMP1 (NP_002849), a gene associated with Zellweger syndrome-2 (3).
TRiP has 1 RNAi stocks for FBgn0034612 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 13 of 4 0.50Down
Head4 11 of 4 0.30Down
Eye5 11 of 4 0.34Down
Thoracicoabdominal ganglion10 12 of 4 0.70Down
Salivary gland2 00 of 4 0.15Down
Crop6 10 of 4 0.40Down
Midgut155 94 of 410.00Up
Tubule7 10 of 4 0.50Down
Hindgut11 14 of 4 0.70None
Heart2 00 of 4 0.16Down
Fat body10 52 of 4 0.66None
Ovary4 02 of 4 0.30Down
Testis8 13 of 4 0.60Down
Male accessory glands13 23 of 4 0.80None
Virgin spermatheca4 10 of 4 0.26Down
Mated spermatheca6 10 of 4 0.43Down
Adult carcass9 21 of 4 0.60Down
Larval CNS5 12 of 4 0.38Down
Larval Salivary gland9 03 of 4 0.63Down
Larval midgut266 334 of 417.17Up
Larval tubule2224 1184 of 4143.30Up
Larval hindgut8 10 of 4 0.54Down
Larval fat body7 10 of 4 0.50Down
Larval trachea2 20 of 4 0.14Down
Larval carcass5 01 of 4 0.32Down
S2 cells (growing)6 01 of 4 0.41Down
Whole fly15 04 of 4

Looking for FBgn0034612. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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