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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034614 through 18771 annotations produced 1 hits



(CG9752):

Annotation Number : CG9752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034614
Gbrowse : chr2R:17181898-17183092 (-) // 100.0 //
Probeset : 1635476_at
Accessions : protein= NP_611573;, nucleotide= NM_137729;
FlyMine data for FBgn0034614.
VDRC has 4 RNAi stocks for FBgn0034614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 04 of 4 0.10Down
Head12 02 of 4 0.10Down
Eye12 13 of 4 0.10Down
Thoracicoabdominal ganglion17 14 of 4 0.10Down
Salivary gland9 30 of 4 0.08Down
Crop12 02 of 4 0.10Down
Midgut16 00 of 4 0.10Down
Tubule34 24 of 4 0.30Down
Hindgut27 14 of 4 0.20Down
Heart6 11 of 4 0.06Down
Fat body8 02 of 4 0.07Down
Ovary331 74 of 4 2.70Up
Testis16 13 of 4 0.10Down
Male accessory glands9 21 of 4 0.10Down
Virgin spermatheca12 02 of 4 0.10Down
Mated spermatheca9 10 of 4 0.08Down
Adult carcass13 30 of 4 0.10Down
Larval CNS245 54 of 4 2.03Up
Larval Salivary gland64 94 of 4 0.54Down
Larval midgut23 12 of 4 0.19Down
Larval tubule23 14 of 4 0.20Down
Larval hindgut114 44 of 4 0.94None
Larval fat body41 53 of 4 0.30Down
Larval trachea127 214 of 4 1.05None
Larval carcass70 84 of 4 0.58Down
S2 cells (growing)143 44 of 4 1.19Up
Whole fly120 44 of 4

Looking for FBgn0034614. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime