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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034622 through 18771 annotations produced 1 hits



(CG15666):

Annotation Number : CG15666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034622
Gbrowse : chr2R:17229489-17233116 (+) // 100.0 //
Probeset : 1641154_at
Accessions : protein= NP_001137727;, nucleotide= NM_001144255;
FlyMine data for FBgn0034622.
Homophila reports that CG15666 is a close match (5e-67) to human gene BBS9;PTHB1 (NP_055266), a gene associated with Bardet-Biedl syndrome 9, 209900 (3).
BioGrid reports that CG15666 interacts with CG3052 CG3217 CG4394 .
VDRC has 4 RNAi stocks for FBgn0034622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.60None
Head45 ± 24 of 4 5.40Up
Eye60 ± 54 of 4 7.15Up
Thoracicoabdominal ganglion10 ± 00 of 4 1.20None
Salivary gland8 ± 20 of 4 0.98None
Crop0 ± 00 of 4 0.10Down
Midgut4 ± 20 of 4 0.50None
Tubule4 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.30Down
Heart5 ± 10 of 4 0.62None
Fat body3 ± 00 of 4 0.39Down
Ovary0 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.32Down
Mated spermatheca1 ± 00 of 4 0.17Down
Adult carcass6 ± 20 of 4 0.70None
Larval CNS1 ± 10 of 4 0.16Down
Larval Salivary gland4 ± 30 of 4 0.53None
Larval midgut2 ± 00 of 4 0.25Down
Larval tubule3 ± 10 of 4 0.40Down
Larval hindgut1 ± 00 of 4 0.21Down
Larval fat body3 ± 10 of 4 0.40None
Larval trachea2 ± 10 of 4 0.25Down
Larval carcass4 ± 00 of 4 0.48Down
S2 cells (growing)3 ± 00 of 4 0.37Down
Whole fly8 ± 00 of 4

Looking for FBgn0034622. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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