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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034624 through 18771 annotations produced 1 hits



(CG17974):

Annotation Number : CG17974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034624
Gbrowse : chr2R:17236559-17238349 (-) // 100.0 //
Probeset : 1640616_at
Accessions : protein= NP_611582;, nucleotide= NM_137738;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0034624.
VDRC has 3 RNAi stocks for FBgn0034624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.30Down
Head12 ± 11 of 4 2.10Up
Eye7 ± 10 of 4 1.17None
Thoracicoabdominal ganglion3 ± 00 of 4 0.50None
Salivary gland16 ± 41 of 4 2.68None
Crop1 ± 00 of 4 0.30Down
Midgut3 ± 10 of 4 0.50None
Tubule3 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 0.80None
Heart4 ± 10 of 4 0.67None
Fat body5 ± 40 of 4 0.80None
Ovary6 ± 00 of 4 1.00None
Testis1 ± 10 of 4 0.30Down
Male accessory glands5 ± 10 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.63None
Mated spermatheca5 ± 11 of 4 0.84None
Adult carcass31 ± 53 of 4 5.00Up
Larval CNS0 ± 00 of 4 0.12Down
Larval Salivary gland3 ± 10 of 4 0.50None
Larval midgut7 ± 00 of 4 1.16None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut14 ± 22 of 4 2.33Up
Larval fat body4 ± 10 of 4 0.80None
Larval trachea5 ± 20 of 4 0.90None
Larval carcass157 ± 234 of 425.33Up
S2 cells (growing)3 ± 10 of 4 0.62None
Whole fly6 ± 11 of 4

Looking for FBgn0034624. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime