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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034628 through 18771 annotations produced 1 hits



acyl co-enzyme A oxidase (Acox57D-p):

Annotation Number : CG9707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034628
Gbrowse : chr2R:17273858-17276788 (+) // 100.0 //
Probeset : 1639943_at
Accessions : protein= NP_523802;, nucleotide= NM_079078;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from elec
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activ
FlyMine data for FBgn0034628.
Homophila reports that CG9707 is a close match (7e-130) to human gene ACOX;ACOX1;SCOX (NP_004026), a gene associated with Peroxisomal acyl-CoA oxidase deficiency, 264470 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 24 of 4 0.10Down
Head112 64 of 4 0.70Down
Eye86 74 of 4 0.55Down
Thoracicoabdominal ganglion24 14 of 4 0.20Down
Salivary gland17 30 of 4 0.11Down
Crop250 64 of 4 1.60Up
Midgut657 494 of 4 4.20Up
Tubule621 654 of 4 4.00Up
Hindgut323 94 of 4 2.10Up
Heart187 34 of 4 1.19Up
Fat body307 44 of 4 1.96Up
Ovary247 64 of 4 1.60Up
Testis6 11 of 4 0.00Down
Male accessory glands16 13 of 4 0.10Down
Virgin spermatheca300 174 of 4 1.91Up
Mated spermatheca247 274 of 4 1.57Up
Adult carcass195 84 of 4 1.20Up
Larval CNS18 24 of 4 0.12Down
Larval Salivary gland32 44 of 4 0.20Down
Larval midgut385 14 of 4 2.45Up
Larval tubule192 64 of 4 1.20Up
Larval hindgut149 114 of 4 0.95None
Larval fat body286 304 of 4 1.80Up
Larval trachea24 54 of 4 0.16Down
Larval carcass28 24 of 4 0.18Down
S2 cells (growing)261 94 of 4 1.66Up
Whole fly157 24 of 4

Looking for FBgn0034628. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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