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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034629 through 18771 annotations produced 1 hits



acyl co-enzyme A oxidase (Acox57D-d):

Annotation Number : CG9709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034629
Gbrowse : chr2R:17276894-17279945 (+) // 100.0 //
Probeset : 1633476_at
Accessions : protein= NP_523803;, nucleotide= NM_079079;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005777 // peroxisome // inferred from elec
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activ
FlyMine data for FBgn0034629.
BDGP gene expression has embryonic in situ data for Acox57D-d: 14 pix of staining in 4 body parts.
Homophila reports that CG9709 is a close match (2e-124) to human gene ACOX;ACOX1;SCOX (NP_004026), a gene associated with Peroxisomal acyl-CoA oxidase deficiency, 264470 (3).
VDRC has 3 RNAi stocks for FBgn0034629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 22 of 4 0.10Down
Head70 ± 44 of 4 0.70Down
Eye29 ± 64 of 4 0.28Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland158 ± 94 of 4 1.50Up
Crop157 ± 124 of 4 1.50Up
Midgut478 ± 314 of 4 4.50Up
Tubule62 ± 74 of 4 0.60Down
Hindgut186 ± 34 of 4 1.80Up
Heart118 ± 74 of 4 1.12None
Fat body260 ± 374 of 4 2.47Up
Ovary146 ± 54 of 4 1.40Up
Testis3 ± 10 of 4 0.00Down
Male accessory glands35 ± 54 of 4 0.30Down
Virgin spermatheca184 ± 174 of 4 1.74Up
Mated spermatheca247 ± 194 of 4 2.34Up
Adult carcass154 ± 74 of 4 1.50Up
Larval CNS16 ± 24 of 4 0.15Down
Larval Salivary gland31 ± 34 of 4 0.30Down
Larval midgut284 ± 204 of 4 2.70Up
Larval tubule48 ± 24 of 4 0.50Down
Larval hindgut67 ± 54 of 4 0.63Down
Larval fat body33 ± 34 of 4 0.30Down
Larval trachea27 ± 34 of 4 0.26Down
Larval carcass23 ± 50 of 4 0.23Down
S2 cells (growing)20 ± 23 of 4 0.20Down
Whole fly105 ± 74 of 4

Looking for FBgn0034629. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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