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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034631 through 18771 annotations produced 1 hits



(CG10496):

Annotation Number : CG10496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034631
Gbrowse : chr2R:17386403-17389475 (-) // 100.0 //
Probeset : 1633477_at
Accessions : protein= NP_611585;, nucleotide= NM_137741;
FlyMine data for FBgn0034631.
BioGrid reports that CG10496 interacts with CG5692 .
VDRC has 2 RNAi stocks for FBgn0034631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 14 of 4 0.80Down
Head27 ± 24 of 4 0.60Down
Eye25 ± 04 of 4 0.57Down
Thoracicoabdominal ganglion36 ± 24 of 4 0.80Down
Salivary gland50 ± 54 of 4 1.14None
Crop30 ± 24 of 4 0.70Down
Midgut34 ± 04 of 4 0.80Down
Tubule29 ± 14 of 4 0.70Down
Hindgut28 ± 24 of 4 0.60Down
Heart19 ± 34 of 4 0.44Down
Fat body38 ± 54 of 4 0.88None
Ovary83 ± 54 of 4 1.90Up
Testis70 ± 24 of 4 1.60Up
Male accessory glands125 ± 64 of 4 2.80Up
Virgin spermatheca39 ± 14 of 4 0.89Down
Mated spermatheca39 ± 14 of 4 0.90None
Adult carcass33 ± 13 of 4 0.80Down
Larval CNS74 ± 54 of 4 1.69Up
Larval Salivary gland63 ± 44 of 4 1.43Up
Larval midgut29 ± 24 of 4 0.66Down
Larval tubule36 ± 14 of 4 0.80Down
Larval hindgut36 ± 14 of 4 0.82Down
Larval fat body37 ± 44 of 4 0.80None
Larval trachea45 ± 54 of 4 1.02None
Larval carcass38 ± 14 of 4 0.88None
S2 cells (growing)85 ± 24 of 4 1.94Up
Whole fly44 ± 04 of 4

Looking for FBgn0034631. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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