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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034634 through 18771 annotations produced 1 hits



(CG10494):

Annotation Number : CG10494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034634
Gbrowse : chr2R:17403600-17406611 (-) // 100.0 //
Probeset : 1638075_a_at
Accessions : protein= NP_611586; /// NP_726079;, nucleotide= NM_137742; /// NM_166457;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0034634.
BDGP gene expression has embryonic in situ data for CG10494: 4 pix of staining in 1 body parts.
BioGrid reports that CG10494 interacts with CG4159 CG4820 CG12470 CG32369 CG4125 CG4164 CG4617 CG5681 .
VDRC has 2 RNAi stocks for FBgn0034634 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 3.40Up
Head12 ± 12 of 4 2.20Up
Eye11 ± 21 of 4 2.03None
Thoracicoabdominal ganglion21 ± 14 of 4 3.70Up
Salivary gland19 ± 81 of 4 3.32None
Crop5 ± 20 of 4 0.90None
Midgut3 ± 00 of 4 0.60None
Tubule6 ± 00 of 4 1.10Up
Hindgut9 ± 01 of 4 1.60None
Heart5 ± 11 of 4 0.93None
Fat body8 ± 50 of 4 1.42None
Ovary5 ± 11 of 4 1.00None
Testis1 ± 00 of 4 0.20None
Male accessory glands11 ± 10 of 4 1.90None
Virgin spermatheca3 ± 10 of 4 0.68None
Mated spermatheca5 ± 10 of 4 0.92None
Adult carcass9 ± 10 of 4 1.70None
Larval CNS11 ± 33 of 4 1.96None
Larval Salivary gland4 ± 20 of 4 0.81None
Larval midgut11 ± 10 of 4 1.93None
Larval tubule6 ± 10 of 4 1.10None
Larval hindgut5 ± 10 of 4 0.86None
Larval fat body6 ± 30 of 4 1.20None
Larval trachea7 ± 22 of 4 1.34None
Larval carcass6 ± 10 of 4 1.04None
S2 cells (growing)5 ± 00 of 4 0.94None
Whole fly5 ± 11 of 4

Looking for FBgn0034634. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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