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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034638 through 18771 annotations produced 1 hits


Annotation Number : CG10433
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034638
Gbrowse : chr2R:17493172-17494458 (-) // 100.0 //
Probeset : 1627489_a_at
Accessions : protein= NP_611590; /// NP_726088;, nucleotide= NM_137746; /// NM_166463;
FlyMine data for FBgn0034638.
BDGP gene expression has embryonic in situ data for CG10433: 11 pix of staining in 4 body parts.
BioGrid reports that CG10433 interacts with CG12470 CG1133 .
VDRC has 1 RNAi stocks for FBgn0034638 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2736 434 of 4 2.40Up
Head2527 1274 of 4 2.20Up
Eye2414 2004 of 4 2.12Up
Thoracicoabdominal ganglion4043 1094 of 4 3.50Up
Salivary gland258 184 of 4 0.23Down
Crop997 144 of 4 0.90None
Midgut218 64 of 4 0.20Down
Tubule138 234 of 4 0.10Down
Hindgut504 154 of 4 0.40Down
Heart5805 3514 of 4 5.09Up
Fat body4736 5274 of 4 4.15Up
Ovary72 54 of 4 0.10Down
Testis59 14 of 4 0.10Down
Male accessory glands1482 644 of 4 1.30Up
Virgin spermatheca4349 1104 of 4 3.81Up
Mated spermatheca4012 194 of 4 3.52Up
Adult carcass4259 1304 of 4 3.70Up
Larval CNS315 454 of 4 0.28Down
Larval Salivary gland78 112 of 4 0.07Down
Larval midgut198 14 of 4 0.17Down
Larval tubule85 24 of 4 0.10Down
Larval hindgut505 234 of 4 0.44Down
Larval fat body777 984 of 4 0.70Down
Larval trachea180 1104 of 4 0.16Down
Larval carcass701 154 of 4 0.61Down
S2 cells (growing)490 234 of 4 0.43Down
Whole fly1141 1074 of 4

Looking for FBgn0034638. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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