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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034643 through 18771 annotations produced 1 hits



(CG10321):

Annotation Number : CG10321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034643
Gbrowse : chr2R:17522172-17525906 (+) // 100.0 //
Probeset : 1636406_at
Accessions : protein= NP_611594;, nucleotide= NM_137750;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0034643.
BDGP gene expression has embryonic in situ data for CG10321: 16 pix of staining in 3 body parts.
Homophila reports that CG10321 is a close match (2e-11) to human gene MRX45;ZNF81 (NP_009068), a gene associated with Mental retardation, X-linked 45, 300498 (3).
BioGrid reports that CG10321 interacts with CG12841 CG14811 CG15116 CG4905 CG12379 .
TRiP has 1 RNAi stocks for FBgn0034643 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 ± 64 of 4 1.90None
Head75 ± 94 of 4 0.90None
Eye84 ± 24 of 4 0.99None
Thoracicoabdominal ganglion101 ± 54 of 4 1.20None
Salivary gland169 ± 64 of 4 1.99Up
Crop100 ± 74 of 4 1.20None
Midgut85 ± 14 of 4 1.00None
Tubule62 ± 34 of 4 0.70Down
Hindgut87 ± 44 of 4 1.00None
Heart62 ± 34 of 4 0.73None
Fat body68 ± 114 of 4 0.80None
Ovary178 ± 54 of 4 2.10Up
Testis52 ± 44 of 4 0.60Down
Male accessory glands86 ± 64 of 4 1.00None
Virgin spermatheca87 ± 64 of 4 1.03None
Mated spermatheca94 ± 64 of 4 1.10None
Adult carcass83 ± 34 of 4 1.00None
Larval CNS156 ± 144 of 4 1.83Up
Larval Salivary gland131 ± 104 of 4 1.54Up
Larval midgut75 ± 34 of 4 0.88None
Larval tubule68 ± 44 of 4 0.80None
Larval hindgut99 ± 34 of 4 1.17None
Larval fat body59 ± 34 of 4 0.70None
Larval trachea101 ± 94 of 4 1.20None
Larval carcass115 ± 114 of 4 1.36None
S2 cells (growing)159 ± 34 of 4 1.87Up
Whole fly85 ± 94 of 4

Looking for FBgn0034643. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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