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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034645 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase B12 (CG10320):

Annotation Number : CG10320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034645
Gbrowse : chr2R:17545845-17546581 (+) // 100.0 //
Probeset : 1640690_at
Accessions : protein= NP_001097399; /// NP_001097400; /// NP_001163240; /// NP_001163241; /// NP_611596;, nucleotide= NM_001103929; /// NM_001103930; /// NM_001169769; /// NM_001169770; /// NM_137752;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0006404 // RNA import into nucleus // inferre
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005747 // mitochondrial respiratory chain complex I
FlyMine data for FBgn0034645.
VDRC has 2 RNAi stocks for FBgn0034645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 34 of 4 0.80None
Head44 ± 34 of 4 1.40None
Eye62 ± 04 of 4 2.01Up
Thoracicoabdominal ganglion41 ± 24 of 4 1.30None
Salivary gland66 ± 104 of 4 2.14Up
Crop45 ± 34 of 4 1.50None
Midgut44 ± 24 of 4 1.40None
Tubule29 ± 14 of 4 1.00None
Hindgut37 ± 84 of 4 1.20None
Heart30 ± 44 of 4 1.00None
Fat body31 ± 104 of 4 1.01None
Ovary32 ± 24 of 4 1.10None
Testis23 ± 23 of 4 0.70None
Male accessory glands64 ± 34 of 4 2.10Up
Virgin spermatheca27 ± 34 of 4 0.89None
Mated spermatheca34 ± 44 of 4 1.11None
Adult carcass60 ± 84 of 4 2.00Up
Larval CNS32 ± 24 of 4 1.06None
Larval Salivary gland32 ± 64 of 4 1.05None
Larval midgut40 ± 44 of 4 1.32None
Larval tubule30 ± 34 of 4 1.00None
Larval hindgut16 ± 34 of 4 0.53None
Larval fat body26 ± 64 of 4 0.80None
Larval trachea20 ± 54 of 4 0.65None
Larval carcass30 ± 24 of 4 0.97None
S2 cells (growing)32 ± 34 of 4 1.04None
Whole fly31 ± 54 of 4

Looking for FBgn0034645. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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