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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034646 through 18771 annotations produced 1 hits



Rae1 (Rae1):

Annotation Number : CG9862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034646
Gbrowse : chr2R:17546260-17547508 (-) // 100.0 //
Probeset : 1636291_at
Accessions : protein= NP_611597;, nucleotide= NM_137753;
FlyMine data for FBgn0034646.
BDGP gene expression has embryonic in situ data for CG9862: 6 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034646 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 14 of 4 0.50Down
Head107 64 of 4 0.50Down
Eye132 44 of 4 0.59Down
Thoracicoabdominal ganglion157 74 of 4 0.70Down
Salivary gland107 54 of 4 0.48Down
Crop129 54 of 4 0.60Down
Midgut105 34 of 4 0.50Down
Tubule85 24 of 4 0.40Down
Hindgut109 34 of 4 0.50Down
Heart108 84 of 4 0.49Down
Fat body108 194 of 4 0.49Down
Ovary388 84 of 4 1.70Up
Testis104 34 of 4 0.50Down
Male accessory glands150 64 of 4 0.70Down
Virgin spermatheca138 54 of 4 0.62Down
Mated spermatheca139 84 of 4 0.63Down
Adult carcass98 104 of 4 0.40Down
Larval CNS374 154 of 4 1.68Up
Larval Salivary gland180 84 of 4 0.81Down
Larval midgut104 54 of 4 0.47Down
Larval tubule91 54 of 4 0.40Down
Larval hindgut131 44 of 4 0.59Down
Larval fat body109 114 of 4 0.50Down
Larval trachea223 204 of 4 1.00None
Larval carcass113 34 of 4 0.51Down
S2 cells (growing)424 74 of 4 1.90Up
Whole fly223 114 of 4

Looking for FBgn0034646. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime