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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034647 through 18771 annotations produced 1 hits



CG15678 (pirk):

Annotation Number : CG15678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034647
Gbrowse : chr2R:17548471-17549749 (-) // 100.0 //
Probeset : 1632964_at
Accessions : protein= NP_611598;, nucleotide= NM_137754;
FlyMine data for FBgn0034647.
BDGP gene expression has embryonic in situ data for CG15678: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 04 of 4 0.20Down
Head88 ± 54 of 4 0.90None
Eye38 ± 124 of 4 0.40Down
Thoracicoabdominal ganglion15 ± 13 of 4 0.20Down
Salivary gland137 ± 294 of 4 1.42None
Crop432 ± 154 of 4 4.50Up
Midgut1198 ± 824 of 412.50Up
Tubule51 ± 94 of 4 0.50Down
Hindgut461 ± 444 of 4 4.80Up
Heart175 ± 564 of 4 1.83None
Fat body70 ± 244 of 4 0.73None
Ovary8 ± 21 of 4 0.10Down
Testis8 ± 12 of 4 0.10Down
Male accessory glands29 ± 32 of 4 0.30Down
Virgin spermatheca46 ± 74 of 4 0.49Down
Mated spermatheca58 ± 44 of 4 0.61None
Adult carcass45 ± 24 of 4 0.50Down
Larval CNS7 ± 20 of 4 0.08Down
Larval Salivary gland66 ± 174 of 4 0.69None
Larval midgut942 ± 1164 of 4 9.80Up
Larval tubule47 ± 74 of 4 0.50Down
Larval hindgut556 ± 394 of 4 5.78Up
Larval fat body74 ± 103 of 4 0.80None
Larval trachea66 ± 494 of 4 0.69None
Larval carcass88 ± 124 of 4 0.91None
S2 cells (growing)87 ± 114 of 4 0.91None
Whole fly96 ± 144 of 4

Looking for FBgn0034647. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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