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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034649 through 18771 annotations produced 1 hits



/// /// /// (CG42379 /// CG42380 /// CG42381 /// CG9865):

Annotation Number : CG9865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034649 /// FBgn0259725 /// FBgn0259726 /// FBgn0259727
Gbrowse : chr2R:17555031-17557560 (-) // 100.0 //
Probeset : 1625692_s_at
Accessions : protein= NP_001137733; /// NP_001137734; /// NP_001137735; /// NP_001137736; /// NP_001137737; /// NP_611600; /// NP_726100;, nucleotide= NM_001144261; /// NM_001144262; /// NM_001144263; /// NM_001144264; /// NM_001144265; /// NM_137756; /// NM_166470;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016021 // integral to membrane //
Interpro : "0016758 // transferase activity
FlyMine data for FBgn0034649 /// FBgn0259725 /// FBgn0259726 /// FBgn0259727.
Homophila reports that CG9865 is a close match (9e-41) to human gene PIGM (NP_660150), a gene associated with Glycosylphosphatidylinositol deficiency, 610293 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain351 84 of 4 1.80Up
Head215 124 of 4 1.10None
Eye162 84 of 4 0.82Down
Thoracicoabdominal ganglion379 124 of 4 1.90Up
Salivary gland274 254 of 4 1.38None
Crop232 144 of 4 1.20None
Midgut262 74 of 4 1.30Up
Tubule643 304 of 4 3.20Up
Hindgut429 114 of 4 2.20Up
Heart183 64 of 4 0.93None
Fat body309 434 of 4 1.56Up
Ovary310 74 of 4 1.60Up
Testis399 94 of 4 2.00Up
Male accessory glands154 94 of 4 0.80Down
Virgin spermatheca301 154 of 4 1.52Up
Mated spermatheca293 254 of 4 1.48Up
Adult carcass281 44 of 4 1.40Up
Larval CNS340 324 of 4 1.72Up
Larval Salivary gland192 134 of 4 0.97None
Larval midgut186 94 of 4 0.94None
Larval tubule237 44 of 4 1.20Up
Larval hindgut364 344 of 4 1.84Up
Larval fat body158 144 of 4 0.80None
Larval trachea149 134 of 4 0.75Down
Larval carcass287 364 of 4 1.45None
S2 cells (growing)186 34 of 4 0.94None
Whole fly198 104 of 4

Looking for FBgn0034649. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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