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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034651 through 18771 annotations produced 1 hits


(CG15676):

Annotation Number : CG15676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034651
Gbrowse : chr2R:17559204-17559850 (+) // 100.0 //
Probeset : 1639491_at
Accessions : protein= NP_611602;, nucleotide= NM_137758;
Pathway : 0016272 // prefoldin complex // inferred from sequence or structural similarity /// 0016272 // prefoldin complex // infe
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0034651.
BDGP gene expression has embryonic in situ data for CG15676: 2 pix of staining in 1 body parts.
BioGrid reports that CG15676 interacts with CG1989 CG32086 CG8383 CG9712 CG1883 CG3365 CG3401 CG4347 CG7048 CG7757 CG8831 CG9633 CG9654 CG15771 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 Dmel CG4460 .
VDRC has 3 RNAi stocks for FBgn0034651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland10 ± 40 of 4 0.28Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.03Down
Fat body0 ± 00 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis613 ± 184 of 417.10Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland8 ± 00 of 4 0.25Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body36 ± 222 of 4 1.00None
Larval trachea4 ± 40 of 4 0.13Down
Larval carcass3 ± 20 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly35 ± 14 of 4

Looking for FBgn0034651. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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