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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034654 through 18771 annotations produced 1 hits



(CG10306):

Annotation Number : CG10306
Flybase ID : FBgn0034654
Gbrowse : chr2R:17572774-17573709 (+) // 100.0 //
Probeset : 1635342_at
Accessions : protein= NP_611604;, nucleotide= NM_137760;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0003743 // translation init
FlyMine data for FBgn0034654.
BDGP gene expression has embryonic in situ data for CG10306: 4 pix of staining in 1 body parts.
BioGrid reports that CG10306 interacts with CG5642 CG6775 CG17383 CG1894 CG30084 .
TRiP has 1 RNAi stocks for FBgn0034654 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain499 134 of 4 0.80Down
Head674 444 of 4 1.10None
Eye942 154 of 4 1.49Up
Thoracicoabdominal ganglion741 524 of 4 1.20None
Salivary gland1652 1204 of 4 2.61Up
Crop573 174 of 4 0.90None
Midgut629 204 of 4 1.00None
Tubule270 144 of 4 0.40Down
Hindgut675 84 of 4 1.10None
Heart647 254 of 4 1.02None
Fat body897 764 of 4 1.42Up
Ovary691 254 of 4 1.10None
Testis445 54 of 4 0.70Down
Male accessory glands2228 1214 of 4 3.50Up
Virgin spermatheca837 244 of 4 1.32Up
Mated spermatheca812 294 of 4 1.29Up
Adult carcass621 194 of 4 1.00None
Larval CNS738 704 of 4 1.17None
Larval Salivary gland1136 254 of 4 1.80Up
Larval midgut540 204 of 4 0.85Down
Larval tubule675 324 of 4 1.10None
Larval hindgut811 344 of 4 1.28Up
Larval fat body546 494 of 4 0.90None
Larval trachea907 184 of 4 1.44Up
Larval carcass613 214 of 4 0.97None
S2 cells (growing)1398 154 of 4 2.21Up
Whole fly632 224 of 4

Looking for FBgn0034654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime