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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034660 through 18771 annotations produced 1 hits



lysyl oxidase-like 2 (lox2):

Annotation Number : CG4402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034660
Gbrowse : chr2R:17677120-17679160 (-) // 100.0 //
Probeset : 1635226_at
Accessions : protein= NP_523806;, nucleotide= NM_079082;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004720 // protein-lysine 6-oxidase activity // inferred from sequence or structural similarity /// 0004720 // protein-
FlyMine data for FBgn0034660.
Homophila reports that CG4402 is a close match (2e-23) to human gene MSR1 (NP_619729), a gene associated with Prostate cancer, hereditary, 176807 (3).
VDRC has 2 RNAi stocks for FBgn0034660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.30Down
Head169 124 of 4 8.30Up
Eye616 134 of 430.24Up
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland7 30 of 4 0.37Down
Crop5 30 of 4 0.30Down
Midgut3 10 of 4 0.20Down
Tubule3 00 of 4 0.10Down
Hindgut8 00 of 4 0.40Down
Heart2 10 of 4 0.13Down
Fat body2 10 of 4 0.12Down
Ovary2 00 of 4 0.10Down
Testis9 11 of 4 0.50Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.17Down
Mated spermatheca2 00 of 4 0.11Down
Adult carcass49 34 of 4 2.40Up
Larval CNS3 10 of 4 0.17Down
Larval Salivary gland2 00 of 4 0.11Down
Larval midgut6 10 of 4 0.30Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.18Down
Larval fat body7 10 of 4 0.30Down
Larval trachea10 121 of 4 0.50None
Larval carcass4 10 of 4 0.21Down
S2 cells (growing)4 00 of 4 0.20Down
Whole fly20 14 of 4

Looking for FBgn0034660. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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