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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034662 through 18771 annotations produced 1 hits



(CG13492):

Annotation Number : CG13492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034662
Gbrowse : chr2R:17708348-17717715 (-) // 100.0 //
Probeset : 1634373_a_at
Accessions : protein= NP_611612; /// NP_726121;, nucleotide= NM_137768; /// NM_166487;
Interpro : 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation //
FlyMine data for FBgn0034662.
BioGrid reports that CG13492 interacts with CG15370 .
VDRC has 2 RNAi stocks for FBgn0034662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion4 00 of 4 0.00Down
Salivary gland2 00 of 4 0.01Down
Crop3 11 of 4 0.00Down
Midgut2434 394 of 413.00Up
Tubule37 173 of 4 0.20Down
Hindgut969 204 of 4 5.20Up
Heart0 00 of 4 0.01Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis2 11 of 4 0.00Down
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass3 10 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 10 of 4 0.01Down
Larval midgut2715 3714 of 414.55Up
Larval tubule4 10 of 4 0.00Down
Larval hindgut461 944 of 4 2.47None
Larval fat body3 20 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass0 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly186 114 of 4

Looking for FBgn0034662. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime