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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034663 through 18771 annotations produced 1 hits


(CG4363):

Annotation Number : CG4363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034663
Gbrowse : chr2R:17721803-17722534 (-) // 100.0 //
Probeset : 1630740_at
Accessions : protein= NP_611613;, nucleotide= NM_137769;
FlyMine data for FBgn0034663.
BDGP gene expression has embryonic in situ data for CG4363: 4 pix of staining in 1 body parts.
BioGrid reports that CG4363 interacts with CG9163 .
VDRC has 1 RNAi stocks for FBgn0034663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye4 ± 31 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut5891 ± 1334 of 411.70Up
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body2 ± 30 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis3 ± 20 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca4 ± 10 of 4 0.01Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut1479 ± 2104 of 4 2.95Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly501 ± 454 of 4

Looking for FBgn0034663. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime