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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034665 through 18771 annotations produced 1 hits


Annotation Number : CG4372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034665
Gbrowse : chr2R:17725109-17726303 (-) // 100.0 //
Probeset : 1625959_at
Accessions : protein= NP_611615;, nucleotide= NM_137771;
Interpro : 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0034665.
Homophila reports that CG4372 is a close match (5e-56) to human gene AGA (NP_000018), a gene associated with Aspartylglucosaminuria (3).
VDRC has 1 RNAi stocks for FBgn0034665 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.80Up
Head1 00 of 4 0.60None
Eye4 10 of 4 2.02None
Thoracicoabdominal ganglion4 20 of 4 2.40None
Salivary gland9 20 of 4 4.58None
Crop5 20 of 4 2.50None
Midgut4 10 of 4 2.10None
Tubule3 00 of 4 1.70Up
Hindgut4 10 of 4 2.20None
Heart4 20 of 4 2.22None
Fat body2 10 of 4 0.96None
Ovary0 00 of 4 0.40None
Testis4 20 of 4 2.10None
Male accessory glands2 10 of 4 1.20None
Virgin spermatheca4 10 of 4 2.01None
Mated spermatheca3 20 of 4 1.81None
Adult carcass4 10 of 4 2.30None
Larval CNS1 00 of 4 0.54None
Larval Salivary gland2 00 of 4 1.08None
Larval midgut3 20 of 4 1.89None
Larval tubule3 10 of 4 1.70None
Larval hindgut2 00 of 4 1.16None
Larval fat body5 20 of 4 2.70None
Larval trachea1 00 of 4 0.63None
Larval carcass1 00 of 4 0.63None
S2 cells (growing)2 00 of 4 1.10None
Whole fly2 00 of 4

Looking for FBgn0034665. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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