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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034670 through 18771 annotations produced 1 hits



(CG13488):

Annotation Number : CG13488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034670
Gbrowse : chr2R:17839131-17839909 (+) // 100.0 //
Probeset : 1624171_at
Accessions : protein= NP_611620;, nucleotide= NM_137776;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034670.
BioGrid reports that CG13488 interacts with CG18764 CG30497 CG5441 CG9135 .
VDRC has 2 RNAi stocks for FBgn0034670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.60None
Head12 10 of 4 1.10None
Eye5 00 of 4 0.44None
Thoracicoabdominal ganglion3 10 of 4 0.30Down
Salivary gland2 10 of 4 0.25Down
Crop1 10 of 4 0.20Down
Midgut130 134 of 411.50Up
Tubule3 00 of 4 0.30Down
Hindgut10 11 of 4 0.90None
Heart54 44 of 4 4.78Up
Fat body3 20 of 4 0.31Down
Ovary0 00 of 4 0.00Down
Testis49 64 of 4 4.40Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca1 00 of 4 0.17Down
Adult carcass17 41 of 4 1.60None
Larval CNS1 10 of 4 0.17Down
Larval Salivary gland0 00 of 4 0.06Down
Larval midgut41 44 of 4 3.62Up
Larval tubule232 304 of 420.50Up
Larval hindgut35 74 of 4 3.16Up
Larval fat body42 64 of 4 3.80Up
Larval trachea2 31 of 4 0.22Down
Larval carcass0 00 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.06Down
Whole fly11 22 of 4

Looking for FBgn0034670. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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