Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034671 through 18771 annotations produced 1 hits



(CG13494):

Annotation Number : CG13494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034671
Gbrowse : chr2R:17841742-17842350 (-) // 100.0 //
Probeset : 1632450_at
Accessions : protein= NP_611621;, nucleotide= NM_137777;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034671.
BDGP gene expression has embryonic in situ data for CG13494: 4 pix of staining in 1 body parts.
BioGrid reports that CG13494 interacts with CG9195 .
VDRC has 3 RNAi stocks for FBgn0034671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head3 ± 11 of 4 0.10Down
Eye4 ± 11 of 4 0.12Down
Thoracicoabdominal ganglion5 ± 01 of 4 0.20Down
Salivary gland11 ± 30 of 4 0.32Down
Crop6 ± 21 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule6 ± 01 of 4 0.20Down
Hindgut7 ± 11 of 4 0.20Down
Heart5 ± 21 of 4 0.14Down
Fat body12 ± 53 of 4 0.35Down
Ovary3 ± 01 of 4 0.10Down
Testis426 ± 264 of 411.60Up
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 13 of 4 0.24Down
Mated spermatheca7 ± 32 of 4 0.20Down
Adult carcass5 ± 11 of 4 0.20Down
Larval CNS7 ± 04 of 4 0.21Down
Larval Salivary gland11 ± 13 of 4 0.32Down
Larval midgut5 ± 11 of 4 0.16Down
Larval tubule5 ± 00 of 4 0.20Down
Larval hindgut7 ± 13 of 4 0.20Down
Larval fat body65 ± 274 of 4 1.80None
Larval trachea3 ± 21 of 4 0.10Down
Larval carcass5 ± 11 of 4 0.16Down
S2 cells (growing)4 ± 02 of 4 0.12Down
Whole fly36 ± 34 of 4

Looking for FBgn0034671. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime