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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034674 through 18771 annotations produced 1 hits



(CG9304):

Annotation Number : CG9304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034674
Gbrowse : chr2R:17860630-17863710 (+) // 100.0 //
Probeset : 1627502_at
Accessions : protein= NP_611624;, nucleotide= NM_137780;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034674.
TRiP has 1 RNAi stocks for FBgn0034674 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034674 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 54 of 4 1.10None
Head103 ± 144 of 4 0.90None
Eye63 ± 34 of 4 0.57Down
Thoracicoabdominal ganglion95 ± 84 of 4 0.90None
Salivary gland69 ± 54 of 4 0.63Down
Crop69 ± 64 of 4 0.60Down
Midgut66 ± 54 of 4 0.60Down
Tubule201 ± 154 of 4 1.80Up
Hindgut56 ± 74 of 4 0.50Down
Heart88 ± 124 of 4 0.80None
Fat body268 ± 174 of 4 2.42Up
Ovary257 ± 34 of 4 2.30Up
Testis33 ± 54 of 4 0.30Down
Male accessory glands138 ± 54 of 4 1.30Up
Virgin spermatheca177 ± 234 of 4 1.60None
Mated spermatheca186 ± 144 of 4 1.68Up
Adult carcass84 ± 74 of 4 0.80Down
Larval CNS194 ± 344 of 4 1.76Up
Larval Salivary gland265 ± 474 of 4 2.40Up
Larval midgut124 ± 74 of 4 1.12None
Larval tubule173 ± 224 of 4 1.60None
Larval hindgut122 ± 64 of 4 1.10None
Larval fat body280 ± 274 of 4 2.50Up
Larval trachea102 ± 204 of 4 0.92None
Larval carcass116 ± 74 of 4 1.05None
S2 cells (growing)61 ± 24 of 4 0.56Down
Whole fly110 ± 64 of 4

Looking for FBgn0034674. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime