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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034684 through 18771 annotations produced 1 hits



(CG13501):

Annotation Number : CG13501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034684
Gbrowse : chr2R:17946699-17948165 (-) // 100.0 //
Probeset : 1640967_at
Accessions : protein= NP_611631;, nucleotide= NM_137787;
Interpro : "0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inte
FlyMine data for FBgn0034684.
BioGrid reports that CG13501 interacts with CG9572 .
VDRC has 2 RNAi stocks for FBgn0034684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye3 00 of 4 0.15Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland1 00 of 4 0.08Down
Crop2 00 of 4 0.10Down
Midgut3 10 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut5 20 of 4 0.20Down
Heart2 10 of 4 0.12Down
Fat body6 30 of 4 0.27Down
Ovary0 00 of 4 0.00Down
Testis277 94 of 411.80Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.21Down
Mated spermatheca6 10 of 4 0.29Down
Adult carcass2 00 of 4 0.10Down
Larval CNS1 00 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.16Down
Larval midgut3 10 of 4 0.15Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body40 162 of 4 1.70None
Larval trachea3 30 of 4 0.14Down
Larval carcass2 00 of 4 0.09Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly23 23 of 4

Looking for FBgn0034684. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime