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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034687 through 18771 annotations produced 1 hits



(CG11475):

Annotation Number : CG11475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034687
Gbrowse : chr2R:17957227-17958791 (-) // 100.0 //
Probeset : 1624487_at
Accessions : protein= NP_611633;, nucleotide= NM_137789;
FlyMine data for FBgn0034687.
VDRC has 3 RNAi stocks for FBgn0034687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion10 ± 10 of 4 0.20Down
Salivary gland9 ± 11 of 4 0.21Down
Crop9 ± 01 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule9 ± 10 of 4 0.20Down
Hindgut9 ± 11 of 4 0.20Down
Heart3 ± 11 of 4 0.09Down
Fat body15 ± 53 of 4 0.35Down
Ovary3 ± 00 of 4 0.10Down
Testis475 ± 124 of 410.90Up
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca14 ± 13 of 4 0.32Down
Mated spermatheca12 ± 23 of 4 0.29Down
Adult carcass8 ± 30 of 4 0.20Down
Larval CNS11 ± 22 of 4 0.26Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut8 ± 10 of 4 0.20Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.11Down
Larval fat body62 ± 124 of 4 1.40None
Larval trachea6 ± 41 of 4 0.16Down
Larval carcass8 ± 03 of 4 0.20Down
S2 cells (growing)7 ± 10 of 4 0.16Down
Whole fly43 ± 24 of 4

Looking for FBgn0034687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime