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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034688 through 18771 annotations produced 1 hits


Annotation Number : CG11474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034688
Gbrowse : chr2R:17958917-17960948 (-) // 100.0 //
Probeset : 1633513_a_at
Accessions : protein= NP_611634; /// NP_726153;, nucleotide= NM_137790; /// NM_166504;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034688.
BDGP gene expression has embryonic in situ data for CG11474: 16 pix of staining in 4 body parts.
BioGrid reports that CG11474 interacts with CG5149 .
VDRC has 3 RNAi stocks for FBgn0034688 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 24 of 4 1.40Up
Head117 74 of 4 1.20None
Eye90 44 of 4 0.91None
Thoracicoabdominal ganglion157 34 of 4 1.60Up
Salivary gland32 33 of 4 0.33Down
Crop121 44 of 4 1.20Up
Midgut67 14 of 4 0.70Down
Tubule156 104 of 4 1.60Up
Hindgut97 04 of 4 1.00None
Heart178 84 of 4 1.81Up
Fat body169 274 of 4 1.71Up
Ovary124 64 of 4 1.30Up
Testis325 134 of 4 3.30Up
Male accessory glands12 12 of 4 0.10Down
Virgin spermatheca93 74 of 4 0.94None
Mated spermatheca92 104 of 4 0.93None
Adult carcass158 64 of 4 1.60Up
Larval CNS42 44 of 4 0.43Down
Larval Salivary gland67 74 of 4 0.69Down
Larval midgut48 64 of 4 0.49Down
Larval tubule63 44 of 4 0.60Down
Larval hindgut59 24 of 4 0.60Down
Larval fat body1125 1444 of 411.40Up
Larval trachea38 34 of 4 0.39Down
Larval carcass153 224 of 4 1.55None
S2 cells (growing)62 34 of 4 0.63Down
Whole fly98 64 of 4

Looking for FBgn0034688. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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