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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034697 through 18771 annotations produced 1 hits



GM130 (GM130):

Annotation Number : CG11061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034697
Gbrowse : chr2R:18012074-18015002 (-) // 100.0 //
Probeset : 1632677_a_at
Accessions : protein= NP_611642; /// NP_726165;, nucleotide= NM_137798; /// NM_166513;
Pathway : 0000137 // Golgi cis cisterna // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum //
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034697.
BioGrid reports that CG11061 interacts with CG1259 CG1391 CG6073 CG9293 CG11148 CG12861 CG13476 CG13871 CG1422 CG14643 CG1474 CG15011 CG15697 CG17050 CG17776 CG18362 CG3001 CG3081 CG31626 CG32354 CG3743 CG3880 CG5334 CG5848 CG8104 CG8189 CG8965 CG9046 CG9075 CG9306 CG9426 .
VDRC has 1 RNAi stocks for FBgn0034697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 84 of 4 1.20None
Head125 ± 104 of 4 1.20None
Eye59 ± 113 of 4 0.56Down
Thoracicoabdominal ganglion161 ± 04 of 4 1.50Up
Salivary gland986 ± 724 of 4 9.37Up
Crop146 ± 44 of 4 1.40Up
Midgut162 ± 54 of 4 1.50Up
Tubule120 ± 144 of 4 1.10None
Hindgut117 ± 24 of 4 1.10None
Heart103 ± 104 of 4 0.98None
Fat body115 ± 184 of 4 1.09None
Ovary179 ± 34 of 4 1.70Up
Testis61 ± 24 of 4 0.60Down
Male accessory glands489 ± 234 of 4 4.60Up
Virgin spermatheca165 ± 74 of 4 1.57Up
Mated spermatheca204 ± 164 of 4 1.94Up
Adult carcass126 ± 134 of 4 1.20None
Larval CNS94 ± 154 of 4 0.90None
Larval Salivary gland794 ± 264 of 4 7.54Up
Larval midgut206 ± 314 of 4 1.97Up
Larval tubule272 ± 104 of 4 2.60Up
Larval hindgut167 ± 264 of 4 1.59None
Larval fat body206 ± 74 of 4 2.00Up
Larval trachea163 ± 234 of 4 1.55Up
Larval carcass127 ± 44 of 4 1.21None
S2 cells (growing)367 ± 104 of 4 3.49Up
Whole fly105 ± 74 of 4

Looking for FBgn0034697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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