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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034700 through 18771 annotations produced 1 hits



(CG11269):

Annotation Number : CG11269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034700
Gbrowse : chr2R:18026446-18026770 (+) // 100.0 //
Probeset : 1630436_at
Accessions : protein= NP_611644;, nucleotide= NM_137800;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034700.
BioGrid reports that CG11269 interacts with CG13272 .
VDRC has 1 RNAi stocks for FBgn0034700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head4 10 of 4 0.40Down
Eye2 10 of 4 0.20Down
Thoracicoabdominal ganglion4 10 of 4 0.40Down
Salivary gland3 00 of 4 0.34Down
Crop3 10 of 4 0.30Down
Midgut2 00 of 4 0.20Down
Tubule2 00 of 4 0.20Down
Hindgut2 00 of 4 0.20Down
Heart1 00 of 4 0.13Down
Fat body7 20 of 4 0.62Down
Ovary3 10 of 4 0.30Down
Testis90 74 of 4 8.00Up
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.13Down
Mated spermatheca1 00 of 4 0.16Down
Adult carcass4 10 of 4 0.40Down
Larval CNS3 10 of 4 0.31Down
Larval Salivary gland2 10 of 4 0.25Down
Larval midgut6 21 of 4 0.60None
Larval tubule6 10 of 4 0.50None
Larval hindgut4 10 of 4 0.39Down
Larval fat body22 52 of 4 2.00None
Larval trachea1 10 of 4 0.17Down
Larval carcass2 00 of 4 0.22Down
S2 cells (growing)8 12 of 4 0.76None
Whole fly11 13 of 4

Looking for FBgn0034700. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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