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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034704 through 18771 annotations produced 1 hits



/// (CG6758 /// DmirCG6758):

Annotation Number : CG6758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034704
Gbrowse : chr2R:18062410-18064933 (+) // 100.0 //
Probeset : 1625144_at
Accessions : protein= NP_611647;, nucleotide= NM_137803;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0034704.
TRiP has 1 RNAi stocks for FBgn0034704 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 ± 44 of 4 1.60Up
Head88 ± 44 of 4 0.90None
Eye68 ± 14 of 4 0.68Down
Thoracicoabdominal ganglion173 ± 24 of 4 1.70Up
Salivary gland113 ± 24 of 4 1.13Up
Crop72 ± 54 of 4 0.70Down
Midgut71 ± 34 of 4 0.70Down
Tubule75 ± 24 of 4 0.80Down
Hindgut78 ± 24 of 4 0.80Down
Heart37 ± 14 of 4 0.37Down
Fat body59 ± 44 of 4 0.59Down
Ovary172 ± 34 of 4 1.70Up
Testis152 ± 24 of 4 1.50Up
Male accessory glands107 ± 64 of 4 1.10None
Virgin spermatheca66 ± 24 of 4 0.66Down
Mated spermatheca64 ± 14 of 4 0.64Down
Adult carcass70 ± 14 of 4 0.70Down
Larval CNS107 ± 74 of 4 1.07None
Larval Salivary gland69 ± 54 of 4 0.69Down
Larval midgut73 ± 24 of 4 0.73Down
Larval tubule77 ± 14 of 4 0.80Down
Larval hindgut71 ± 34 of 4 0.71Down
Larval fat body65 ± 44 of 4 0.70Down
Larval trachea65 ± 44 of 4 0.65Down
Larval carcass59 ± 24 of 4 0.59Down
S2 cells (growing)75 ± 24 of 4 0.76Down
Whole fly100 ± 44 of 4

Looking for FBgn0034704. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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