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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034706 through 18771 annotations produced 1 hits


Annotation Number : CG11275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034706
Gbrowse : chr2R:18067197-18070155 (+) // 100.0 //
Probeset : 1637513_at
Accessions : protein= NP_611649;, nucleotide= NM_137805;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0034706.
BDGP gene expression has embryonic in situ data for CG11275: 38 pix of staining in 18 body parts.
BioGrid reports that CG11275 interacts with CG12787 CG15578 CG17077 CG3924 CG4766 CG8697 CG1130 CG11534 CG11650 CG12496 CG13188 CG13458 CG14411 CG15117 CG1678 CG16987 CG18584 CG2198 CG2218 CG31036 CG33054 CG3388 CG3925 CG4799 CG5134 CG5371 CG5466 CG6009 CG7001 CG7713 CG7757 CG9495 CG33343 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 04 of 4 0.50Down
Head116 54 of 4 1.80Up
Eye134 84 of 4 2.04Up
Thoracicoabdominal ganglion34 34 of 4 0.50Down
Salivary gland54 74 of 4 0.82None
Crop463 114 of 4 7.00Up
Midgut42 14 of 4 0.60Down
Tubule185 144 of 4 2.80Up
Hindgut147 24 of 4 2.20Up
Heart132 44 of 4 2.01Up
Fat body94 94 of 4 1.44Up
Ovary22 14 of 4 0.30Down
Testis86 44 of 4 1.30Up
Male accessory glands194 344 of 4 2.90Up
Virgin spermatheca214 54 of 4 3.26Up
Mated spermatheca231 214 of 4 3.51Up
Adult carcass160 74 of 4 2.40Up
Larval CNS29 24 of 4 0.44Down
Larval Salivary gland69 84 of 4 1.06None
Larval midgut58 84 of 4 0.89None
Larval tubule118 64 of 4 1.80Up
Larval hindgut133 94 of 4 2.02Up
Larval fat body77 104 of 4 1.20None
Larval trachea122 244 of 4 1.86Up
Larval carcass145 464 of 4 2.22None
S2 cells (growing)9 12 of 4 0.14Down
Whole fly65 24 of 4

Looking for FBgn0034706. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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